Basic Information
Locus ID:
Sbi_jg15118
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 7045882 | 7047855 | + | Sbi_jg15118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 43,993.23 Da | 43.97 | 85.47 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 49 | 107 | 5.6E-13 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 175 | 245 | 1.9E-6 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 341 | 385 | 6.0E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 387 | 4.2E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 389 | 2.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 343 | 384 | 0.0052 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 343 | 385 | 10.084539 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010671482.3 | RING-H2 finger protein ATL20 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology