Basic Information
Locus ID:
Sbi_jg15109
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
beta-amylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 6952399 | 6976824 | + | Sbi_jg15109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 56,464.10 Da | 50.43 | 77.23 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 447 | 495 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 70 | 243 | 3.32E-18 | IPR017853 |
| SUPERFAMILY | SSF57850 | RING/U-box | 444 | 499 | 2.37E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 420 | 500 | 2.7E-18 | IPR013083 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 109 | 164 | 2.3E-13 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 165 | 250 | 2.0E-11 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 68 | 108 | 3.9E-6 | - |
| SMART | SM00184 | ring_2 | 449 | 494 | 8.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 449 | 495 | 12.459772 | IPR001841 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15210.2 | beta-amylase 5. cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. | 0 |
| RefSeq | XP_021843073.1 | putative RING-H2 finger protein ATL21B [Spinacia oleracea] | 0 |
| P10538 | Beta-amylase OS=Glycine max OX=3847 GN=BMY1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9REX2 | Beta-amylase OS=Spinacia oleracea OX=3562 GN=SOVF_074390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology