Basic Information
Locus ID:
Sbi_jg14831
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 2874793 | 2875290 | + | Sbi_jg14831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 18,120.11 Da | 33.79 | 87.09 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 94 | 156 | 3.29054E-17 | IPR002048 |
| CDD | cd00051 | EFh | 18 | 80 | 1.0605E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 18 | 79 | 2.5E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 92 | 155 | 4.4E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 9 | 156 | 8.55E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 83 | 1.2E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 86 | 161 | 4.7E-23 | - |
| SMART | SM00054 | efh_1 | 18 | 46 | 8.6E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 54 | 82 | 0.017 | IPR002048 |
| SMART | SM00054 | efh_1 | 94 | 122 | 1.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 130 | 158 | 2.4E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 126 | 161 | 13.341799 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 14 | 49 | 15.182896 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 50 | 85 | 11.277538 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 90 | 125 | 14.90394 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 139 | 151 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 27 | 39 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 63 | 75 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 103 | 115 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_027084308.1 | probable calcium-binding protein CML18 [Coffea arabica] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6U175 | probable calcium-binding protein CML18 OS=Coffea arabica OX=13443 GN=LOC113706582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology