Basic Information
Locus ID:
Sbi_jg14184
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 31668357 | 31669631 | + | Sbi_jg14184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 48,954.36 Da | 33.10 | 84.34 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 44 | 1.2E-11 | IPR001810 |
| Pfam | PF07734 | F-box associated | 259 | 384 | 1.9E-10 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 52 | 1.03E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 57 | 1.6E-11 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 4.0E-12 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 130 | 353 | 7.3E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 13.975023 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49980.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021865347.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| Q9SN20 | Putative F-box protein At3g49980 OS=Arabidopsis thaliana OX=3702 GN=At3g49980 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9RTN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_029950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |