Basic Information
Locus ID:
Sbi_jg1407
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 57446909 | 57447649 | - | Sbi_jg1407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 28,059.38 Da | 44.17 | 88.66 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 191 | 240 | 4.51588E-16 | - |
| Pfam | PF13639 | Ring finger domain | 191 | 240 | 9.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 244 | 6.86E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 244 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 239 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 240 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 161 | - | - |
| Coils | Coil | Coil | 132 | 166 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021756763.1 | uncharacterized protein LOC110721857 isoform X2 [Chenopodium quinoa] | 0 |
| Q7ZW78 | E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LGV5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26583 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13624, Sbi_jg1407, Sbi_jg52269 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20498, Seu_jg3331, Seu_jg9580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005455 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl55767, Sgl60975, Sgl72806, Sgl73728, Sgl73751, Sgl76345 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2119 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00360.v3.1 |