Basic Information
Locus ID:
Sbi_jg13946
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 24637270 | 24642161 | - | Sbi_jg13946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 117,742.01 Da | 51.15 | 99.38 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 275 | 321 | 4.77707E-15 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 916 | 953 | 5.5E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 274 | 345 | 1.3E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 660 | 1043 | 6.4E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 349 | 1.41E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 350 | 689 | 2.55E-28 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 352 | 485 | 9.4E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 486 | 727 | 1.5E-16 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 830 | 1048 | 2.8E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 351 | 4.2E-21 | IPR013083 |
| SMART | SM00185 | arm_5 | 421 | 461 | 450.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 688 | 728 | 140.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 274 | 341 | 1.8E-20 | IPR003613 |
| SMART | SM00185 | arm_5 | 830 | 871 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 915 | 955 | 0.0084 | IPR000225 |
| SMART | SM00185 | arm_5 | 380 | 420 | 2.4 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 270 | 348 | 23.646322 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 391 | 433 | 8.837399 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.1 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_021756033.1 | putative U-box domain-containing protein 42 [Chenopodium quinoa] | 0 |
| Q9CAA7 | Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KVI2 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34869 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18339 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026307 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13946, Sbi_jg51994 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9865 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022499 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34986, Sgl40360 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002774, gene:ENSEOMG00000003595 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0016310, CQ.Regalona.r1.6BG0017490 |
| Arecaceae | Cocos nucifera | 1 | contig69653802G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706597 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G19355 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G68940.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018123m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g24080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g046400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0473 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0496 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g10330 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25420 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025362 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15851 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1152, AH07.3315, BH06.1191, BH07.3132, CH06.1306 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0144120, gene-QOZ80_2BG0199560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0611360.1, HORVU.MOREX.r3.7HG0671710.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018603, gene-QYE76_025203 |
| Poaceae | Oryza coarctata | 4 | Oco03G020500, Oco04G021140, Oco11G007300, Oco12G007390 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g49520.1, LOC_Os06g16410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G262600, gene-BS78_10G118200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203599, Pt_Chr0306679, Pt_Chr0404443 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G003250, Chr09G021140, Chr11G017900, Chr13G005410 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G525500, Tel7E01G384300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG044050, gene_TRIDC6BG051760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G288500.1, TraesCS6B02G318200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb189550_P004, Zm00001eb380500_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-45567, nbis-gene-50382, nbis-gene-8851 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14324, Zma_g29497, Zma_g31742 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.155, evm.TU.LG12.1565 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g07780, gene.Posoc03g07790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.528 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22801 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14999 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.334 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006752 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7242 |
| Salicaceae | Populus euphratica | 3 | populus_peu06987, populus_peu20915, populus_peu20916 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641909 |
| Solanaceae | Solanum chilense | 1 | SOLCI003620200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019230 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14547 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2917, TC03G0888 |