Basic Information
Locus ID:
Sbi_jg13820
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 20267240 | 20277659 | - | Sbi_jg13820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 35,370.80 Da | 41.13 | 83.01 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.6963E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 3.5E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 205 | 240 | 4.3E-9 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 78 | 4.96E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 194 | 256 | 2.65E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 197 | 245 | 3.9E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 4.0E-25 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.3E-19 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 74 | 18.562737 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 200 | 243 | 11.101068 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754095.1 | ubiquitin receptor RAD23c-like isoform X3 [Chenopodium quinoa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8J6CJL9 | Ubiquitin receptor RAD23 OS=Gossypium anomalum OX=47600 GN=CXB51_035406 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology