Basic Information
Locus ID:
Sbi_jg13726
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 18528571 | 18551700 | + | Sbi_jg13726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 110,433.40 Da | 36.80 | 83.49 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 3.8995E-166 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 1.2E-18 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 709 | 3.3E-14 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 1.0E-90 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 870 | 981 | 8.8E-12 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 719 | 787 | 1.7E-16 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 451 | 9.81E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 464 | 984 | 9.1E-123 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 354 | 2.0E-106 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 468 | 579 | 4.5E-25 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 857 | 984 | 5.6E-34 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 456 | 5.5E-21 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 720 | 836 | 2.0E-37 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 1.6E-115 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 601 | 719 | 5.5E-29 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 4.1E-29 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 6.6E-19 | IPR015341 |
| Coils | Coil | Coil | 917 | 937 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_010679911.2 | alpha-mannosidase isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QHW5 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_177470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology