Basic Information
Locus ID:
Sbi_jg13522
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 15347413 | 15357794 | + | Sbi_jg13522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 64,349.57 Da | 51.13 | 94.61 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 4.24973E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 387 | 5.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 299 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 557 | 5.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 514 | 0.056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 345 | 0.04 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 1.04E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 574 | 5.2E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 521 | 3.4E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 430 | 469 | 19.0 | IPR001680 |
| SMART | SM00668 | ctlh | 96 | 153 | 3.9E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 1.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 567 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 10.495596 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 96 | 153 | 10.005337 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 63 | 95 | 8.549703 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 301 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 301 | 13.616343 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 374 | 388 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021843614.1 | WD repeat-containing protein 26-like [Spinacia oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R545 | WD repeat-containing protein 26 OS=Spinacia oleracea OX=3562 GN=SOVF_111900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology