Basic Information
Locus ID:
Sbi_jg13486
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
AAA-type ATPase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 14827319 | 14828330 | - | Sbi_jg13486 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 31,093.15 Da | 60.30 | 94.41 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 145 | 198 | 3.38875E-4 | - |
| CDD | cd18139 | HLD_clamp_RarA | 210 | 263 | 5.16124E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 145 | 273 | 6.69E-20 | IPR027417 |
| SUPERFAMILY | SSF46934 | UBA-like | 3 | 40 | 1.5E-8 | IPR009060 |
| Gene3D | G3DSA:3.40.50.300 | - | 121 | 203 | 1.5E-15 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 209 | 279 | 3.3E-13 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 5 | 42 | 1.0E-9 | - |
| SMART | SM00165 | uba_6 | 2 | 40 | 5.6E-5 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1 | 41 | 11.655301 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 112 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24290.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_010680182.2 | ATPase WRNIP1 [Beta vulgaris subsp. vulgaris] | 0 |
| P45262 | Replication-associated recombination protein A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rarA PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RIC3 | UBA domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_063200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19016 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25097 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027059 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132400 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13485, Sbi_jg13486, Sbi_jg52394 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9457 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023135 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33479, Sgl38840 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003817, gene:ENSEOMG00000004173 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0021810 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30279280, pistato.v30280870 |
| Apiaceae | Apium graveolens | 1 | Ag11G04148 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G003070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716204 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2604.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G00566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G24290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009719m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g23470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g032490.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2293 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g20630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.373 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031704 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1508, evm.TU.LG20.370 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.1049 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23736 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6311 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21742 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.1, add.evm.TU.utg000027l.2 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017371, Maker00017425 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20993 |
| Salicaceae | Populus euphratica | 1 | populus_peu18404 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633167 |
| Solanaceae | Solanum chilense | 1 | SOLCI006476400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013066 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10264 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0341 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23610.v3.1 |