Basic Information
Locus ID:
Sbi_jg13152
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 9554995 | 9559833 | - | Sbi_jg13152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 69,497.27 Da | 37.56 | 86.10 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 8.66862E-44 | - |
| Pfam | PF03000 | NPH3 family | 211 | 464 | 4.4E-85 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 6.2E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 117 | 7.61E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 121 | 4.8E-12 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.778367 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 488 | 84.142159 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 617 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010679621.1 | BTB/POZ domain-containing protein NPY4 [Beta vulgaris subsp. vulgaris] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N4D8 | BTB/POZ domain-containing protein NPY4 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology