Basic Information
Locus ID:
Sbi_jg13129
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Casein kinase II subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 9107845 | 9117785 | - | Sbi_jg13129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 47,852.24 Da | 31.80 | 90.80 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14132 | STKc_CK2_alpha | 93 | 397 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 112 | 397 | 7.9E-65 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 82 | 401 | 1.62E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 189 | 397 | 3.5E-117 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 112 | 188 | 3.5E-117 | - |
| SMART | SM00220 | serkin_6 | 112 | 397 | 6.1E-75 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 112 | 397 | 42.618969 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 225 | 237 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 118 | 141 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67380.1 | casein kinase alpha 1. casein kinase II catalytic subunit alpha | 0 |
| RefSeq | XP_021865577.1 | casein kinase II subunit alpha-2 [Spinacia oleracea] | 0 |
| Q08467 | Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=CKA1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJT1 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_064020 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology