Basic Information
Locus ID:
Sbi_jg13039
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 7489996 | 7490977 | - | Sbi_jg13039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 9,394.73 Da | 47.26 | 73.46 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 20 | 71 | 4.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 73 | 3.1E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 74 | 5.7E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 71 | 10.438611 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012079253.1 | E3 ubiquitin-protein ligase MBR2 [Jatropha curcas] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | B9SC96 | RING-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1410010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13039 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21230 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028652, Pov_00033909, Pov_00033910 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132619581, gene-LOC132637834, gene-LOC132637850 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000413600, SOLCI002808400, SOLCI003913300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005954, gene-LOC107022247, gene-LOC114075203 |