Basic Information
Locus ID:
Sbi_jg12843
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 4549115 | 4561444 | - | Sbi_jg12843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 139,701.59 Da | 49.09 | 77.36 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 658 | 814 | 1.03173E-29 | - |
| CDD | cd12108 | Hr-like | 52 | 178 | 8.12592E-33 | - |
| CDD | cd12108 | Hr-like | 311 | 439 | 3.63125E-13 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1123 | 1166 | 1.16081E-16 | - |
| Pfam | PF14599 | Zinc-ribbon | 1171 | 1228 | 1.6E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 54 | 180 | 5.2E-12 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 995 | 1070 | 9.7E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1123 | 1165 | 1.4E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 312 | 441 | 1.8E-5 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 654 | 815 | 4.1E-9 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1123 | 1169 | 1.82E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 986 | 1051 | 3.92E-7 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1061 | 1116 | 5.49E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 48 | 198 | 3.7E-34 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1119 | 1168 | 6.0E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1235 | 1.2E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 314 | 457 | 6.2E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 901 | 2.7E-26 | - |
| SMART | SM00184 | ring_2 | 1124 | 1165 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1060 | 1123 | 28.976147 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 988 | 1057 | 26.078772 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1124 | 1166 | 11.176261 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUB5 | Zinc finger protein BRUTUS OS=Spinacia oleracea OX=3562 GN=SOVF_140190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology