Basic Information
Locus ID:
Sbi_jg12547
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000022l | 13781 | 15097 | - | Sbi_jg12547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 50,642.15 Da | 43.71 | 91.89 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 1 | 38 | 1.1E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 269 | 368 | 1.0E-6 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 83 | 1.83E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 58 | 1.7E-8 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 3.5E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 129 | 385 | 9.0E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 10.530751 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021771170.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RTN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_029950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |