Basic Information
Locus ID:
Sbi_jg12388
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 123484853 | 123497312 | - | Sbi_jg12388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 93,092.63 Da | 34.81 | 92.75 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 672 | 704 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 544 | 574 | 0.24 | IPR001680 |
| Pfam | PF13445 | RING-type zinc-finger | 7 | 53 | 2.2E-6 | IPR027370 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 178 | 469 | 5.27E-15 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 65 | 8.35E-9 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 542 | 831 | 2.47E-43 | IPR036322 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | 5.8E-15 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 191 | 460 | 1.1E-11 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 636 | 834 | 1.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 635 | 6.1E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 623 | 665 | 0.74 | IPR001680 |
| SMART | SM00320 | WD40_4 | 750 | 787 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 708 | 749 | 36.0 | IPR001680 |
| SMART | SM00184 | ring_2 | 7 | 55 | 9.0E-6 | IPR001841 |
| SMART | SM00320 | WD40_4 | 537 | 574 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 668 | 705 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 0.4 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 7 | 56 | 11.751628 | IPR001841 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 544 | 583 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 675 | 704 | 8.808332 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 132 | 465 | 10.209708 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 675 | 714 | 10.541869 | IPR001680 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21651.1 | zinc ion binding. | 0 |
| RefSeq | XP_010666896.1 | uncharacterized protein LOC104884010 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8B7J5 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_005290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23145 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1079 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030176 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12388, Sbi_jg45954, Sbi_jg45955 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20286 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012124 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl71605 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005992, gene:ENSEOMG00000037515 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0017890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00899 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702608 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2763.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G03820 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21651.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19180.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0101s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.840 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037850 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25334 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2399, BH05.2500, CH05.2595 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0372670, gene-QOZ80_5BG0420010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0065120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013164 |
| Poaceae | Oryza coarctata | 2 | Oco09G010000, Oco10G010090 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g34880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G149300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505050 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G020140, Chr12G017830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G434500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG039410, gene_TRIDC1BG044810 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G263800.2, TraesCS1B02G274400.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb120420_P001, Zm00001eb337940_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13971 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27173 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1158, evm.TU.LG14.508 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g18750, gene.Posoc05g18840 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.609 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9641 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2484 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18165, nbisL1-mrna-18166 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.610 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2898 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20429 |
| Salicaceae | Populus euphratica | 2 | populus_peu19080, populus_peu19094 |
| Solanaceae | Solanum chilense | 1 | SOLCI001197300 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9906_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2001 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11100.v3.1 |