Basic Information
Locus ID:
Sbi_jg12217
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 120839426 | 120852031 | + | Sbi_jg12217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 203,383.44 Da | 49.10 | 83.20 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1462 | 1884 | 1.65048E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1510 | 1889 | 1.1E-79 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1455 | 1882 | 7.06E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 179 | 639 | 1.6E-38 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1762 | 1887 | 1.9E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1405 | 1651 | 2.2E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 167 | 489 | 2.1E-50 | IPR011989 |
| SMART | SM00119 | hect_3 | 1473 | 1889 | 4.0E-75 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1486 | 1889 | 55.095291 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1281 | 1303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 1012 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1275 | 1305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1103 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology