halophFGD

Basic Information

Locus ID: Sbi_jg11910

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: multicellular organism development

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000001l	115920604	115928581	-	Sbi_jg11910

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.27	45,740.59 Da	36.12	83.56	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF11891	Protein RETICULATA-related	195	373	2.2E-61	IPR021825

Best hit

Source	Best Hit ID	Description
TAIR	AT2G37860.3	Protein of unknown function (DUF3411). Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae
RefSeq	XP_021843733.1	protein RETICULATA, chloroplastic [Spinacia oleracea]
Swiss-Prot	B9DFK5	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1
TrEMBL	A0A0K9QT86	Protein RETICULATA-RELATED 1, chloroplastic-like OS=Spinacia oleracea OX=3562 GN=SOVF_143860 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14831, jg35958
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2033, gene_26044
Amaranthaceae	Atriplex hortensis	2	Ah011504, Ah032102
Amaranthaceae	Beta vulgaris	2	BVRB_2g038900, BVRB_9g210850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11910, Sbi_jg30118, Sbi_jg43572, Sbi_jg46855
Amaranthaceae	Salicornia europaea	2	Seu_jg18329, Seu_jg21150
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004094, GOSA_00009476
Amaranthaceae	Suaeda glauca	4	Sgl66081, Sgl70396, Sgl80328, Sgl82797
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015790, gene:ENSEOMG00000017081 ... gene:ENSEOMG00000020430, gene:ENSEOMG00000038670, gene:ENSEOMG00000048442, gene:ENSEOMG00000052492
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0002960, CQ.Regalona.r1.2BG0004120 ... CQ.Regalona.r1.9AG0010560, CQ.Regalona.r1.9BG0011890
Anacardiaceae	Pistacia vera	3	pistato.v30057300, pistato.v30064710, pistato.v30284800
Apiaceae	Apium graveolens	2	Ag5G02365, Ag7G01201
Arecaceae	Cocos nucifera	2	COCNU_10G010350, COCNU_16G008470
Arecaceae	Phoenix dactylifera	3	gene-LOC103713015, gene-LOC103722547, gene-LOC113460985
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.83.V1.1, AsparagusV1_04.539.V1.1 ... AsparagusV1_08.1254.V1.1
Asteraceae	Flaveria trinervia	1	Ftri17G13170
Brassicaceae	Arabidopsis thaliana	2	AT2G37860.3, AT5G22790.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013586m.g.v1.0, Thhalv10016685m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g20170.v2.2, Sp6g22640.v2.2
Brassicaceae	Brassica nigra	4	BniB02g040920.2N, BniB04g046180.2N, BniB06g006700.2N ... BniB08g011390.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1713, Ceq08G1101
Casuarinaceae	Casuarina glauca	2	Cgl05G1715, Cgl08G1126
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g12720, gene.Cymno08g00550
Dunaliellaceae	Dunaliella salina	1	Dusal.0915s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g06660, gene.Thate08g24570
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8633
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1132, evm.TU.LG09.776
Plantaginaceae	Plantago ovata	2	Pov_00002852, Pov_00015869
Plumbaginaceae	Limonium bicolor	2	Lb2G09351, Lb3G19927
Poaceae	Echinochloa crus-galli	7	AH03.685, AH09.1620, BH03.807, BH09.1816, CH03.901 ... CH04.2563, CH09.1946
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_4AG0310070, gene-QOZ80_4BG0341250 ... gene-QOZ80_7AG0561470, gene-QOZ80_7BG0594710
Poaceae	Lolium multiflorum	2	gene-QYE76_041837, gene-QYE76_045151
Poaceae	Oryza coarctata	2	Oco13G004310, Oco14G004970
Poaceae	Oryza sativa	4	LOC_Os03g27340.1, LOC_Os04g44290.1, LOC_Os07g13590.1 ... LOC_Os11g24500.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G108200, gene-BS78_06G163700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0302047, Pt_Chr0303912, Pt_Chr0306767
Poaceae	Sporobolus alterniflorus	4	Chr24G004220, Chr25G006940, Chr28G003660, Chr30G006850
Poaceae	Thinopyrum elongatum	2	Tel2E01G447500, Tel2E01G650300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG031640, gene_TRIDC2AG054620 ... gene_TRIDC2BG036440, gene_TRIDC2BG057350
Poaceae	Triticum aestivum	6	TraesCS2A02G234300.1, TraesCS2A02G377800.1 ... TraesCS2B02G261500.1, TraesCS2B02G394800.1, TraesCS2D02G241700.1, TraesCS2D02G374200.1
Poaceae	Zea mays	2	Zm00001eb076950_P003, Zm00001eb303990_P001
Poaceae	Zoysia japonica	2	nbis-gene-26583, nbis-gene-37118
Poaceae	Zoysia macrostachya	3	Zma_g20077, Zma_g4948, Zma_g6213
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.851, evm.TU.LG17.853
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g01990
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.595, evm.TU.Scaffold_1_RagTag.1723
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24132, nbisL1-mrna-5516, nbisL1-mrna-5518
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1453, nbisL1-mrna-16362
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19826, nbisL1-mrna-3768
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000016l.641, evm.TU.utg000027l.200
Rhizophoraceae	Kandelia obovata	2	Maker00016264, Maker00018072
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-5010, nbisL1-mrna-5779
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-12071, nbisL1-mrna-13687
Salicaceae	Populus euphratica	3	populus_peu21964, populus_peu21975, populus_peu36787
Solanaceae	Lycium barbarum	2	gene-LOC132600514, gene-LOC132630508
Solanaceae	Solanum chilense	2	SOLCI002623600, SOLCI005692000
Solanaceae	Solanum pennellii	2	gene-LOC107003233, gene-LOC107031515
Tamaricaceae	Reaumuria soongarica	2	STRG.3101_chr01_+, gene_8601
Tamaricaceae	Tamarix chinensis	2	TC03G1866, TC07G0395
Zosteraceae	Zostera marina	1	Zosma05g29460.v3.1