Basic Information
Locus ID:
Sbi_jg11794
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 114160589 | 114166177 | + | Sbi_jg11794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 28,313.09 Da | 49.07 | 65.70 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 49 | 88 | 1.5E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 100 | 6.63E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 100 | 1.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 28 | 88 | 0.0028 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 38 | 89 | 9.568184 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 56 | 65 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_010689296.1 | E3 ubiquitin-protein ligase RMA1H1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N9A6 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology