Basic Information
Locus ID:
Sbi_jg11622
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
TPL
Description:
primary shoot apical meristem specification
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 111723798 | 111725496 | - | Sbi_jg11622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 31,721.82 Da | 45.99 | 105.70 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 225 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 113 | 285 | 2.0E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 77 | 286 | 7.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 187 | 225 | 0.005 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 141 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 184 | 56.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_010691083.1 | protein TOPLESS [Beta vulgaris subsp. vulgaris] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LMV8 | TOPLESS OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |