Basic Information
Locus ID:
Sbi_jg11582
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 111252437 | 111258649 | - | Sbi_jg11582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 60,037.63 Da | 47.08 | 82.06 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 171 | 303 | 1.92142E-66 | - |
| Pfam | PF16124 | RecQ zinc-binding | 305 | 386 | 1.5E-15 | IPR032284 |
| Pfam | PF09382 | RQC domain | 394 | 450 | 4.7E-12 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 187 | 293 | 4.7E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 94 | 165 | 1.43E-10 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 169 | 437 | 6.18E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 73 | 170 | 5.4E-34 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 389 | 456 | 5.0E-11 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 171 | 388 | 2.8E-62 | IPR027417 |
| SMART | SM00490 | helicmild6 | 213 | 294 | 8.5E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 85 | 447 | 1.3E-115 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 188 | 349 | 17.753956 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 174 | 245 | 10.111444 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 87 | 163 | 12.175243 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 102 | 111 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 480 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021844419.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 4A [Spinacia oleracea] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology