Basic Information
Locus ID:
Sbi_jg11580
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 111242264 | 111247970 | - | Sbi_jg11580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 78,070.52 Da | 45.51 | 80.81 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 467 | 500 | 5.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 547 | 0.0095 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 366 | 688 | 3.43E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 365 | 696 | 1.5E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 647 | 682 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 399 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 454 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 548 | 3.8E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 36 | 94 | 4.4E-10 | IPR006595 |
| SMART | SM00320 | WD40_4 | 600 | 638 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 500 | 0.0012 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 466 | 500 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 408 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 36 | 94 | 12.063656 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 466 | 509 | 12.17936 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 344 | - | - |
| Coils | Coil | Coil | 13 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_021736656.1 | protein TOPLESS [Chenopodium quinoa] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IHA3 | TOPLESS OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11580, Sbi_jg46521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20833 |