Basic Information
Locus ID:
Sbi_jg11531
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 110627649 | 110633916 | + | Sbi_jg11531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 152,269.05 Da | 36.14 | 102.69 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1115 | 1335 | 4.58224E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 798 | 1092 | 7.85521E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 494 | 694 | 2.69939E-111 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 181 | 468 | 9.22869E-95 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 180 | 447 | 2.4E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 512 | 646 | 7.6E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1134 | 1282 | 1.0E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 800 | 1041 | 9.8E-28 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1107 | 1343 | 3.04E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 170 | 479 | 5.23E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 489 | 716 | 2.86E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 797 | 1099 | 2.88E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 762 | 1098 | 4.2E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1100 | 1353 | 2.0E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 486 | 734 | 2.9E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 153 | 476 | 6.2E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 521 | 694 | 5.9E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1143 | 1328 | 1.4E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 800 | 1080 | 35.531464 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1117 | 1351 | 18.627579 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 494 | 717 | 22.635828 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 180 | 460 | 30.688597 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 619 | 633 | - | IPR017871 |
| Coils | Coil | Coil | 341 | 361 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology