Basic Information
Locus ID:
Sbi_jg11530
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 110614695 | 110620849 | + | Sbi_jg11530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 32,451.62 Da | 54.35 | 91.88 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04003 | Dip2/Utp12 Family | 130 | 231 | 2.9E-12 | IPR007148 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 274 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15420.1 | 0 | |
| RefSeq | XP_010691203.2 | WD repeat-containing protein 43 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C9AE90 | Utp12 domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12042, jg23124 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26185 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11530, Sbi_jg46470 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20779 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005216 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55967, Sgl61138 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018861, gene:ENSEOMG00000037296 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010300, CQ.Regalona.r1.9AG0014330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127730 |
| Apiaceae | Apium graveolens | 1 | Ag5G00129 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002820 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721842 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.712.V1.1, AsparagusV1_09.1431.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G13876 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008433m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g006430.2N, BniB03g026290.2N, BniB06g040830.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1524 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1689, Cgl04G0661 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01980 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-724 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2015 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002853, Pov_00037866 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12124 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.2532, BH02.2630, BH02.2634, CH02.2866 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038500, gene-QOZ80_1BG0088400 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0275940.1, HORVU.MOREX.r3.3HG0275950.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000188, gene-QYE76_054252 |
| Poaceae | Oryza coarctata | 3 | Oco01G015860, Oco02G016180, Oco24G011020 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g46060.1, LOC_Os12g43830.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G222800, gene-BS78_K141000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604953, Pt_Chr0704733 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G005800, Chr03G019190, Chr05G027560, Chr08G022840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G024300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG035150, gene_TRIDC3BG039420 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G234700.1, TraesCS3B02G265100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb294740_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11532, nbis-gene-31495 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11455, Zma_g8920 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1752, evm.TU.LG15.1435 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g24950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1210 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6851, nbisL1-mrna-6914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5926 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.353 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004254 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16351 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18060 |
| Salicaceae | Populus euphratica | 2 | populus_peu02846, populus_peu33739 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632970 |
| Solanaceae | Solanum chilense | 1 | SOLCI004631800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015324 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10127 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2160 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10740.v3.1 |