Basic Information
Locus ID:
Sbi_jg11170
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 104919225 | 104924910 | + | Sbi_jg11170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 50,174.86 Da | 46.82 | 76.33 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 28 | 344 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 42 | 342 | 5.7E-87 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 395 | 1.1E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 13 | 410 | 5.8E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 444 | 2.9E-204 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 194 | 209 | 1.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 279 | 289 | 1.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 162 | 185 | 1.5E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 181 | 197 | 8.0E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 240 | 253 | 8.0E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 44 | 61 | 8.0E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 77 | 95 | 8.0E-41 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 257 | 275 | 8.0E-41 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 447 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_010678848.1 | histone deacetylase 6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology