Basic Information
Locus ID:
Sbi_jg1105
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 50175456 | 50183767 | + | Sbi_jg1105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 168,710.98 Da | 39.55 | 106.85 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 316 | 603 | 2.29062E-104 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 953 | 1247 | 6.12039E-92 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 828 | 1.83297E-100 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1270 | 1490 | 1.32688E-124 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 970 | 1197 | 4.6E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 319 | 583 | 7.1E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1289 | 1437 | 1.0E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 647 | 781 | 9.0E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 953 | 1252 | 2.49E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 624 | 851 | 1.97E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1264 | 1499 | 3.25E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 297 | 613 | 3.01E-40 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 914 | 1253 | 8.6E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1256 | 1506 | 1.3E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 616 | 870 | 5.7E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 287 | 612 | 1.0E-56 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1298 | 1483 | 5.9E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 656 | 837 | 1.1E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 318 | 595 | 37.693356 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1272 | 1506 | 17.747231 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | 22.62916 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 955 | 1225 | 34.500904 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| Coils | Coil | Coil | 476 | 496 | - | - |
| Coils | Coil | Coil | 907 | 931 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010684771.2 | ABC transporter C family member 5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology