Basic Information
Locus ID:
Sbi_jg11002
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 100882261 | 100918202 | - | Sbi_jg11002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 35,214.33 Da | 61.07 | 62.45 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 2.1E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 1.7E-42 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 1.2E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 319 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021852937.1 | ubiquitin fusion degradation protein 1 homolog [Spinacia oleracea] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RPW9 | Ubiquitin fusion degradation protein 1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_047510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology