Basic Information
Locus ID:
Sbi_jg10957
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the chaperonin (HSP60) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 98897243 | 98902961 | + | Sbi_jg10957 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 12,323.47 Da | 21.52 | 71.27 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54849 | GroEL-intermediate domain like | 59 | 101 | 3.2E-11 | IPR027410 |
| Gene3D | G3DSA:3.30.260.10 | - | 56 | 102 | 1.6E-9 | IPR027410 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56500.1 | TCP-1/cpn60 chaperonin family protein. | 0 |
| RefSeq | XP_023927265.1 | ruBisCO large subunit-binding protein subunit beta, chloroplastic [Quercus suber] | 0 |
| C0Z361 | Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A392QLT9 | RuBisCO subunit binding-protein beta subunit (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10957, Sbi_jg60501 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24478 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52858, Sgl58138 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2451 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2599 |