Basic Information
Locus ID:
Sbi_jg10794
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 92770229 | 92772807 | + | Sbi_jg10794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 10,767.03 Da | 78.30 | 64.95 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 36 | 78 | 1.6E-10 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 23 | 77 | 6.67E-12 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 7 | 83 | 7.9E-22 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 1 | 93 | 13.951469 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_048500382.1 | AMSH-like ubiquitin thioesterase 3 isoform X6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | S8DIY7 | MPN domain-containing protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_15365 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg10794, Sbi_jg16797, Sbi_jg20202, Sbi_jg22537 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2426.V1.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29011, nbis-gene-51055 |