Basic Information
Locus ID:
Sbi_jg10121
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 49947106 | 49972096 | - | Sbi_jg10121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 134,792.36 Da | 48.15 | 75.74 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1063 | 1170 | 4.62178E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 487 | 791 | 2.32271E-91 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1061 | 1160 | 4.4E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 507 | 869 | 8.9E-71 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 906 | 942 | 6.3E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 471 | 791 | 3.16E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 905 | 951 | 2.29E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 800 | 1217 | 1.36E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 638 | 803 | 1.5E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 804 | 900 | 2.8E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 979 | 1217 | 1.1E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 463 | 637 | 4.8E-22 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 901 | 957 | 1.3E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 906 | 944 | 0.0016 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1077 | 1160 | 1.3E-19 | IPR001650 |
| SMART | SM00487 | ultradead3 | 483 | 770 | 9.4E-24 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 502 | 753 | 12.690811 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 906 | 945 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1054 | 1208 | 15.826928 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 921 | 930 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 570 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology