Basic Information
Locus ID:
Sbi_jg10013
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000001l | 42975310 | 42984036 | - | Sbi_jg10013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 114,319.11 Da | 60.48 | 74.96 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 236 | 370 | 2.06603E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 925 | 991 | 7.6E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 259 | 368 | 5.8E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 922 | 999 | 9.59E-15 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 139 | 396 | 4.94E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 794 | 854 | 1.98E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 918 | 1003 | 2.8E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 140 | 400 | 5.3E-26 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 791 | 855 | 0.015 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 924 | 992 | 2.7E-10 | IPR014720 |
| SMART | SM00577 | forpap2 | 203 | 379 | 4.0E-12 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 819 | 856 | 8.663803 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 923 | 993 | 12.135313 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 392 | 15.612799 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1039 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNK5 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_159350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology