Basic Information
Locus ID:
STRG.9810_chr06_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 3341003 | 3349223 | - | STRG.9810_chr06_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 123,451.58 Da | 51.89 | 67.72 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 589 | 890 | 2.8E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 99 | 136 | 2.8E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 586 | 895 | 1.41E-81 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 97 | 138 | 1.71E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 581 | 903 | 9.0E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 81 | 140 | 3.5E-14 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 588 | 893 | 48.915394 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 99 | 136 | 12.345888 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 589 | 604 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 99 | 136 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 172 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q930 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Spinacia oleracea OX=3562 GN=SOVF_205740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology