Basic Information
Locus ID:
STRG.9762_chr06_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 1737833 | 1741675 | - | STRG.9762_chr06_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 65,466.80 Da | 49.29 | 64.76 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 307 | 334 | 3.6E-4 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 485 | 572 | 1.9E-31 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 342 | 368 | 0.062 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 278 | 471 | 8.6E-28 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 307 | 339 | 1.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 342 | 374 | 0.001 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 304 | 338 | 10.950397 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 112 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021750456.1 | pentatricopeptide repeat-containing protein At2g15690-like [Chenopodium quinoa] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803N2S6 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology