Basic Information
Locus ID:
STRG.8951_chr03_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 12975252 | 12977583 | - | STRG.8951_chr03_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 49,208.70 Da | 64.82 | 73.52 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 159 | 202 | 6.98069E-19 | - |
| Pfam | PF13639 | Ring finger domain | 159 | 202 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 211 | 3.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 207 | 7.7E-23 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 156 | 210 | 0.0075 | - |
| SMART | SM00184 | ring_2 | 160 | 201 | 5.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 202 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 449 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021758655.1 | RING-H2 finger protein ATL52-like [Chenopodium quinoa] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DJC3 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology