Basic Information
Locus ID:
STRG.8543_chr06_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 5502203 | 5504332 | - | STRG.8543_chr06_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 41,929.62 Da | 51.99 | 79.89 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 7.89384E-20 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 207 | 2.47E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 202 | 3.4E-23 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 152 | 204 | 0.0027 | - |
| SMART | SM00184 | ring_2 | 156 | 197 | 4.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 13.13841 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 351 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_003634417.1 | PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9DYI1 | RING-type E3 ubiquitin transferase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology