Basic Information
Locus ID:
STRG.8197_chr05_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 52451606 | 52468981 | - | STRG.8197_chr05_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 60,031.00 Da | 43.91 | 102.01 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 220 | 512 | 2.53787E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 342 | 0.027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 512 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 469 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 300 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 254 | 8.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 213 | 512 | 6.41E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 477 | 5.5E-56 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 478 | 536 | 1.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 386 | 424 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 513 | 2.9E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 54 | 110 | 6.7E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 216 | 255 | 5.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 470 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 0.0049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 305 | 9.731054 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 223 | 257 | 10.416506 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 110 | 9.52377 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 516 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 522 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 257 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 9.025906 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 242 | 256 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 242 | 256 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 500 | 514 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 2.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_022763863.1 | WD repeat-containing protein 26-like isoform X1 [Durio zibethinus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6AG69 | WD repeat-containing protein 26-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111309181 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology