Basic Information
Locus ID:
STRG.8170_chr05_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Cleavage and polyadenylation specificity factor subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 51865761 | 51902827 | - | STRG.8170_chr05_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 40,873.77 Da | 62.25 | 94.09 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 320 | 364 | 3.30088E-18 | - |
| Pfam | PF13639 | Ring finger domain | 320 | 362 | 5.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 366 | 1.82E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 367 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 361 | 7.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 362 | 12.828597 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021746814.1 | E3 ubiquitin protein ligase RIE1-like [Chenopodium quinoa] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N0J1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology