Basic Information
Locus ID:
STRG.7673_chr05_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 34536706 | 34540310 | - | STRG.7673_chr05_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 70,623.58 Da | 38.85 | 102.59 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 293 | 4.17655E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 418 | 454 | 3.8E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 374 | 413 | 2.3E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 458 | 495 | 1.6E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 247 | 317 | 8.4E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 345 | 618 | 1.26E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 323 | 1.94E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 245 | 320 | 1.3E-29 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 121 | 2.8E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 482 | 632 | 2.6E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 331 | 481 | 7.3E-35 | IPR011989 |
| SMART | SM00185 | arm_5 | 497 | 537 | 6.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 538 | 578 | 50.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 250 | 313 | 1.4E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 456 | 496 | 5.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 374 | 414 | 1.3E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 415 | 455 | 1.9E-4 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 320 | 41.364258 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 426 | 468 | 8.7674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 385 | 427 | 13.4924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 508 | 545 | 9.0824 | IPR000225 |
| Coils | Coil | Coil | 604 | 624 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021717676.1 | U-box domain-containing protein 14 [Chenopodium quinoa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ERV6 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology