Basic Information
Locus ID:
STRG.4903_chr03_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 1419164 | 1429747 | - | STRG.4903_chr03_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 72,084.93 Da | 36.55 | 100.08 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 264 | 306 | 1.65921E-28 | - |
| Pfam | PF04564 | U-box domain | 260 | 330 | 7.7E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 387 | 426 | 8.2E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 552 | 591 | 2.8E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 508 | 7.9E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 336 | 7.83E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 358 | 642 | 8.19E-50 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 121 | 9.0E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 535 | 651 | 2.2E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 346 | 534 | 2.1E-40 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 333 | 8.8E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 510 | 550 | 22.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 551 | 591 | 2.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 428 | 468 | 0.21 | IPR000225 |
| SMART | SM00185 | arm_5 | 469 | 509 | 0.011 | IPR000225 |
| SMART | SM00185 | arm_5 | 387 | 427 | 2.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 593 | 633 | 130.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 2.9E-35 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 398 | 440 | 11.7424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 45.406746 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 480 | 522 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 439 | 481 | 8.627399 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 352 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_038992745.1 | U-box domain-containing protein 13-like [Hibiscus syriacus] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZWQ6 | RING-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_018338 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology