Basic Information
Locus ID:
STRG.336_chr01_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 30571112 | 30573616 | - | STRG.336_chr01_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 41,165.87 Da | 53.55 | 67.31 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 324 | 361 | 4.04768E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 322 | 365 | 3.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 368 | 1.46E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 372 | 3.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 324 | 361 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 362 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| Coils | Coil | Coil | 199 | 219 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology