Basic Information
Locus ID:
STRG.32329_chr09_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 129666155 | 129669612 | - | STRG.32329_chr09_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 46,983.91 Da | 53.66 | 81.28 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 55 | 86 | 0.26 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 58 | 399 | 2.75E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 121 | 405 | 3.1E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 0.097 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 320 | 8.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 21.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_038684264.1 | autophagy-related protein 18a-like [Tripterygium wilfordii] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7CBJ3 | Autophagy-related protein 18a OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology