Basic Information
Locus ID:
STRG.3068_chr01_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 118974874 | 118976596 | - | STRG.3068_chr01_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 45,099.80 Da | 71.49 | 67.02 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 218 | 259 | 4.20908E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 283 | 400 | 2.3E-28 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 6 | 38 | 9.2E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 217 | 259 | 2.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 268 | 3.31E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 265 | 5.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 218 | 258 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 218 | 259 | 12.179465 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010262557.1 | PREDICTED: E3 ubiquitin-protein ligase RDUF1-like [Nelumbo nucifera] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834Z0M0 | RING-type E3 ubiquitin transferase OS=Tetracentron sinense OX=13715 GN=HHK36_016367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology