Basic Information
Locus ID:
STRG.29472_chr10_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5939287 | 5943143 | - | STRG.29472_chr10_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 64,138.01 Da | 46.05 | 98.81 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 149 | 165 | 0.012 | IPR001611 |
| Pfam | PF18511 | F-box | 2 | 41 | 2.1E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 6.3E-25 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 512 | 2.16E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 574 | 8.9E-173 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 6.3E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 2.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 330.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0012 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010682986.2 | protein AUXIN SIGNALING F-BOX 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DDK8 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology