Basic Information
Locus ID:
STRG.29142_chr11_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 23445834 | 23463996 | - | STRG.29142_chr11_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 43,290.67 Da | 62.83 | 87.25 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 333 | 377 | 1.56196E-19 | - |
| Pfam | PF13639 | Ring finger domain | 333 | 375 | 9.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 380 | 3.83E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 319 | 386 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 334 | 374 | 5.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 334 | 375 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11680.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_047314948.1 | E3 ubiquitin-protein ligase At1g12760-like [Impatiens glandulifera] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J4ZFK8 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_019186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology