Basic Information
Locus ID:
STRG.27995_chr04_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 113615050 | 113617471 | - | STRG.27995_chr04_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 38,348.80 Da | 64.79 | 55.58 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 195 | 236 | 2.05961E-24 | - |
| Pfam | PF13639 | Ring finger domain | 194 | 236 | 9.1E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 38 | 1.1E-9 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 241 | 3.09E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 241 | 1.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 195 | 235 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 195 | 236 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 339 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_021772245.1 | probable E3 ubiquitin-protein ligase RHC1A [Chenopodium quinoa] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9D9X9 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology