Basic Information
Locus ID:
STRG.253_chr01_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Protein BREAST CANCER SUSCEPTIBILITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 26955555 | 26966051 | - | STRG.253_chr01_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 74,760.42 Da | 51.93 | 75.39 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17734 | BRCT_Bard1_rpt1 | 454 | 533 | 1.97448E-31 | - |
| Pfam | PF13771 | PHD-like zinc-binding domain | 335 | 414 | 6.0E-10 | - |
| Pfam | PF16589 | BRCT domain, a BRCA1 C-terminus domain | 563 | 662 | 7.0E-7 | IPR001357 |
| Pfam | PF00533 | BRCA1 C Terminus (BRCT) domain | 469 | 527 | 1.0E-7 | IPR001357 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 25 | 68 | 1.6E-7 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 455 | 542 | 8.9E-25 | IPR036420 |
| SUPERFAMILY | SSF52113 | BRCT domain | 563 | 665 | 1.7E-8 | IPR036420 |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 89 | 1.24E-14 | - |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 451 | 556 | 1.5E-30 | IPR036420 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 98 | 8.7E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 562 | 667 | 1.1E-20 | IPR036420 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 417 | 1.8E-21 | IPR013083 |
| SMART | SM00292 | BRCT_7 | 447 | 530 | 9.3E-12 | IPR001357 |
| SMART | SM00292 | BRCT_7 | 563 | 658 | 0.0091 | IPR001357 |
| SMART | SM00184 | ring_2 | 27 | 64 | 4.6E-4 | IPR001841 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 561 | 655 | 12.14334 | IPR001357 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 455 | 540 | 15.48174 | IPR001357 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 294 | 414 | 24.206991 | IPR034732 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 65 | 10.468117 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 42 | 51 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 261 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04020.2 | breast cancer associated RING 1. Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | 0 |
| RefSeq | XP_028088770.1 | BRCA1-associated RING domain protein 1 isoform X2 [Camellia sinensis] | 0 |
| F4I443 | BRCA1-associated RING domain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BARD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5C9H2 | BRCA1-associated RING domain protein 1 OS=Nyssa sinensis OX=561372 GN=F0562_002406 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22309, jg35444, jg8668 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14361, gene_5282, gene_5286, gene_651 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016382, Ah029205 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g165610, BVRB_8g187360 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1166, Sbi_jg35422, Sbi_jg40566, Sbi_jg50593 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2150, Seu_jg3548 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018107, GOSA_00024437 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl45218, Sgl45235, Sgl50015, Sgl74208, Sgl74211, Sgl77638 ... |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005554, gene:ENSEOMG00000033335 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0011830, CQ.Regalona.r1.7BG0013890 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015990, pistato.v30075910 |
| Apiaceae | Apium graveolens | 4 | Ag2G01296, Ag2G01298, Ag7G00035, Ag8G00748 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020500, scaffold009984G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703717, gene-LOC103716250 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.154.V1.1, AsparagusV1_07.1985.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G21678, Ftri17G00307, Ftri17G28730, Ftri6G27338 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04020.1, AT4G21070.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006912m.g.v1.0, Thhalv10024364m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02860.v2.2, Sp7g19160.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g001490.2N, BniB03g000680.2N, BniB03g022240.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1356 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1420 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04530 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate04g00810, gene.Thate04g16490, gene.Thate04g16500 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-6366, nbisL1-mrna-9698, nbisL1-mrna-9699 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1121, evm.TU.LG12.155 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024587, Pov_00038530 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24930, Lb4G26026 |
| Poaceae | Echinochloa crus-galli | 8 | AH05.1787, AH05.1988, AH09.1535, BH05.1954, BH05.2129 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_4AG0310980, gene-QOZ80_4BG0342190 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0070230.1, HORVU.MOREX.r3.1HG0078370.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_013937, gene-QYE76_013938, gene-QYE76_014832 ... |
| Poaceae | Oryza coarctata | 5 | Oco07G010570, Oco08G010310, Oco09G012620, Oco10G012700 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os04g43300.1, LOC_Os05g40810.1, LOC_Os05g43610.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_06G157200, gene-BS78_09G180200 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0302108, Pt_Chr0302132, Pt_Chr0504246, Pt_Chr0504250 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G017220, Chr12G019500, Chr18G012490, Chr18G013560 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G493200, Tel1E01G536800, Tel2E01G283000 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG045340, gene_TRIDC1AG048940 ... |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G304700.1, TraesCS1A02G329600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb077450_P001, Zm00001eb245990_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-14394, nbis-gene-14395, nbis-gene-25341 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g21605, Zma_g26893, Zma_g28465 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG01.1329, evm.TU.LG01.545, evm.TU.LG03.917 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g01130, gene.Posoc10g05060 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.858, evm.TU.Scaffold_5_RagTag.1128 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11597, nbisL1-mrna-25027 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4874, nbisL1-mrna-6143 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19222 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.396, evm.TU.utg000022l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013168, Maker00016219 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-59, nbisL1-mrna-9896 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10290, nbisL1-mrna-19833 |
| Salicaceae | Populus euphratica | 2 | populus_peu00932, populus_peu30745 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605718, gene-LOC132610669, gene-LOC132611460 |
| Solanaceae | Solanum chilense | 3 | SOLCI000661100, SOLCI002722200, SOLCI004840000 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107005400, gene-LOC107018841, gene-LOC107022026 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.253_chr01_-, gene_9697 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0588, TC06G1111 |
| Zosteraceae | Zostera marina | 3 | Zosma01g38440.v3.1, Zosma03g23680.v3.1, Zosma05g29400.v3.1 |