Basic Information
Locus ID:
STRG.24955_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 131752015 | 131768424 | - | STRG.24955_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 34,306.18 Da | 49.53 | 76.41 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| PRINTS | PR02051 | Protein family FAM175 signature | 11 | 29 | 1.3E-21 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 31 | 48 | 1.3E-21 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 187 | 201 | 1.3E-21 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 79 | 98 | 1.3E-21 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 107 | 123 | 1.3E-21 | IPR023238 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 158 | 178 | 5.0E-35 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 195 | 215 | 5.0E-35 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 267 | 293 | 5.0E-35 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 1 | 22 | 5.0E-35 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 49 | 73 | 5.0E-35 | IPR023241 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08780.1 | 0 | |
| RefSeq | XP_034693530.1 | BRCA1-A complex subunit Abraxas 1 isoform X3 [Vitis riparia] | 0 |
| TrEMBL | F6GXT4 | Protein FAM175A OS=Vitis vinifera OX=29760 GN=VIT_08s0058g00530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3224 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2290 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003224 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24303, Sbi_jg8133 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11889 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52487, Sgl57779 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004244, gene:ENSEOMG00000023922 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010730, CQ.Regalona.r1.5BG0011250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267860 |
| Apiaceae | Apium graveolens | 1 | Ag5G01639 |
| Arecaceae | Cocos nucifera | 1 | contig69363059G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708924 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3387.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021171m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g055770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0957 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0975 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g01650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1267s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5508 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.950 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006944 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09140 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.43, AH05.67, BH04.52, CH04.170, CH05.19, CH07.1608 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0313470, gene-QOZ80_5AG0378790 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0175640.1, HORVU.MOREX.r3.5HG0465240.1 |
| Poaceae | Oryza coarctata | 3 | Oco07G008650, Oco08G008590, Oco14G009750 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g40320.1, LOC_Os07g35600.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G007600, gene-BS78_07G038600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302349, Pt_Chr0702856, Pt_Chr0705237 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G008210, Chr0G006540, Chr16G008140, Chr19G011470 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G587700, Tel5E01G261300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG049230, gene_TRIDC2BG051720 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G382300.1, TraesCS1B02G407600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163300_P001, Zm00001eb421620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25831, nbis-gene-26958 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18330, Zma_g24606 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2805, evm.TU.LG16.856 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g09210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1869, evm.TU.Scaffold_2_RagTag.583 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5633 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10320, nbisL1-mrna-1349 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3660, nbisL1-mrna-9611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.991, evm.TU.utg000016l.730 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005233, Maker00017133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2660, nbisL1-mrna-4921 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13804, nbisL1-mrna-16661 |
| Salicaceae | Populus euphratica | 1 | populus_peu25374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630928 |
| Solanaceae | Solanum chilense | 1 | SOLCI003291200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029242 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24955_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2756 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17730.v3.1 |