Basic Information
Locus ID:
STRG.24622_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 123922599 | 123924426 | - | STRG.24622_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 44,233.67 Da | 32.44 | 84.32 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 199 | 327 | 1.3E-13 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 328 | 1.7E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 176 | 1.19E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 172 | 328 | 6.1E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 171 | 8.6E-8 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 328 | 1.0E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 325 | 12.218557 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 173 | 11.277464 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 397 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_010243936.1 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Nelumbo nucifera] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6P548 | Fasciclin-like arabinogalactan protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33391 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology