Basic Information
Locus ID:
STRG.24388_chr08_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 118082896 | 118086849 | - | STRG.24388_chr08_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 68,254.17 Da | 48.49 | 97.64 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 26 | 66 | 4.8E-21 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 86 | 131 | 4.0E-23 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 60 | 5.76E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 553 | 2.16E-31 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 64 | 1.3E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 595 | 5.6E-177 | IPR032675 |
| SMART | SM00256 | fbox_2 | 28 | 69 | 3.1E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 499 | 524 | 500.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 123 | 147 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 414 | 1.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 148 | 173 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 174 | 193 | 650.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 307 | 331 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 450 | 473 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 355 | 550.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology