Basic Information
Locus ID:
STRG.22146_chr09_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 35547713 | 35558986 | - | STRG.22146_chr09_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 65,644.82 Da | 46.85 | 92.53 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 20 | 60 | 1.4E-17 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 167 | 184 | 0.37 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 301 | 322 | 0.23 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 79 | 125 | 8.3E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 106 | 554 | 2.62E-31 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 53 | 4.19E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 58 | 1.8E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 59 | 586 | 4.4E-174 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 495 | 519 | 97.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 142 | 167 | 19.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 446 | 469 | 42.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 326 | 349 | 60.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 386 | 410 | 1.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 117 | 141 | 120.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ARE6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology